tooluniverse-microbiome-research
Microbiome research using MGnify, GTDB, ENA, OLS (ENVO biomes), EuropePMC, BacDive (strain phenotypes), MediaDive (growth media recipes), and GMrepo (gut microbiome disease-association counts). Covers study discovery, taxonomic profiling, host-microbe interaction analysis, biome-by-condition queries, strain culturing requirements, and phenotype/disease prevalence lookups. Use for microbiome study selection, organism-environment associations, clinical-microbiome literature review, and "how do I grow this organism" / "how prevalent is this species in condition X" questions. Distinct from analytical workflow (use tooluniverse-metagenomics-analysis for that).
85%
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Low
Low-risk findings worth noting
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The skill queries bibliographic and genomic databases like EuropePMC, PubMed, and MGnify, where literature abstracts and metadata retrieved at runtime may contain outsider-authored text.
- Repository
mims-harvard/ToolUniverse
- Revision
37bb81a
- Audited
- Security analysis
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