Content
75%Weight 40%Scale 1-5Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.
A well-organized, action-dense pipeline skill that sequences 9 omics phases and surfaces concrete tool-parameter pitfalls while pushing detail to reference files. It would reach the top tier by inlining a compact executable example and an explicit per-phase validation checkpoint.
Suggestions
Inline one small executable snippet (e.g., a Python block running a cross-layer concordance count) so the core analysis is copy-paste ready, not only described via tool-reference.md.
Add an explicit validation/checkpoint step to one or two fragile phases (e.g., verify Ensembl IDs resolve after Phase 1 before Phase 2 depends on them) to strengthen feedback loops.
Confirm the five referenced files (tool-reference.md, report-template.md, integration-scoring.md, response-formats.md, use-patterns.md) are present in the bundle so the one-level-deep references are materialized, not dangling.
| Dimension | Reasoning | Score |
|---|---|---|
Conciseness | Largely lean — it assumes Claude knows what omics layers are and avoids padding, with a dense, useful KEY PRINCIPLES list and per-phase tool notes. A few enumerated principles and section transitions could be trimmed without loss, keeping it just below a 5. | 4 / 5 |
Actionability | Names exact tools and pinpoints parameter pitfalls ('STRING protein_ids: must be array', 'ReactomeAnalysis newline-separated'), which is highly actionable. It is mostly executable guidance but defers full per-phase workflows and code to tool-reference.md rather than inlining them, leaving minor gaps. | 4 / 5 |
Workflow Clarity | The 9-phase pipeline is clearly sequenced with 'ALWAYS FIRST' disambiguation and a report-first principle, plus a completeness checklist concept. It is not a destructive/batch operation, so no 3-cap applies, but explicit per-phase validation checkpoints are only implied rather than spelled out inline. | 4 / 5 |
Progressive Disclosure | Good structure: SKILL.md is an overview with a clear reference-files table pointing one level deep to tool-reference.md, report-template.md, integration-scoring.md, and others, each with described contents. Minor gap: no references/scripts/assets bundle directories exist, so the split is documentary rather than materialized here. | 4 / 5 |
Total | 16 / 20 Passed |