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tooluniverse-pharmacokinetics

Pharmacokinetic (PK) analysis of concentration-time data — non-compartmental analysis (NCA) for Cmax, Tmax, AUC (0-t and 0-∞), terminal half-life, clearance (CL), volume of distribution (Vd), MRT, and absolute bioavailability (F). Also one-compartment fitting. Use when you have plasma/serum drug concentrations over time after a dose and need PK parameters, or to compute bioavailability from IV + oral AUCs. NOT for ADMET property prediction from structure (use tooluniverse-admet-prediction).

80

Quality

100%

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SecuritybySnyk

Low

Low-risk findings worth noting

The canonical home for this skill is tooluniverse-pharmacokinetics in mims-harvard/ToolUniverse

SKILL.md
Quality
Evals
Security

Quality

Content

100%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A tightly written, highly actionable PK/NCA skill: executable examples, a clearly sequenced workflow with validation thresholds and recovery guidance, and clean progressive disclosure via one real bundle script. No padding or redundant explanation.

DimensionReasoningScore

Conciseness

Lean and dense — tables of operational guidance, no padding, no explaining of basic concepts Claude already knows (it assumes PK literacy and gives only the actionable definitions, units gotchas, and interpretation notes).

5 / 5

Actionability

Fully executable copy-paste examples: a complete `tu run NCA_compute_parameters` JSON payload with units, a bioavailability call with concrete numbers, and a real referenced script (`scripts/nca_from_csv.py`) with usage — covering the common cases.

5 / 5

Workflow Clarity

Clear 5-step sequence (prepare → run NCA → interpret → bioavailability → quality gotchas) with explicit validation thresholds (extrapolation >20%, r_squared < 0.9, F > 1) and feedback loops (>20% → report AUC0-last; bad fit → half-life unreliable; F>1 → recheck units).

5 / 5

Progressive Disclosure

Well-organized overview with a single clearly signaled, one-level-deep reference (the CSV script) that offloads the BLQ-handling variant rather than inlining it; clean section navigation and a related-skills pointer.

5 / 5

Total

20

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20

Passed

Description

100%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

An excellent description: concrete capabilities, natural trigger terms, explicit use-when guidance, and a clearly stated not-for boundary that distinguishes it from the sibling ADMET-prediction skill. Third-person voice is maintained throughout.

DimensionReasoningScore

Specificity

Lists multiple concrete actions with comprehensive coverage — NCA for Cmax, Tmax, AUC (0-t and 0-∞), terminal half-life, clearance, Vd, MRT, bioavailability, plus one-compartment fitting.

5 / 5

Completeness

Explicitly answers both what (PK analysis / NCA for the listed parameters, one-compartment fitting) and when ('Use when you have plasma/serum drug concentrations over time after a dose and need PK parameters, or to compute bioavailability from IV + oral AUCs').

5 / 5

Trigger Term Quality

Comprehensive natural domain terms including synonyms: 'pharmacokinetic/PK', 'concentration-time data', 'plasma/serum drug concentrations over time', 'bioavailability', 'IV + oral AUCs', 'half-life', 'clearance' — exactly what a user with PK data would say.

5 / 5

Distinctiveness Conflict Risk

Clear PK-NCA niche with an explicit disambiguation boundary — 'NOT for ADMET property prediction from structure (use tooluniverse-admet-prediction)' — minimizing trigger overlap with the sibling skill.

5 / 5

Total

20

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
mims-harvard/ToolUniverse
Reviewed

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