tooluniverse-systems-biology
Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway enrichment, protein-pathway relationships, network reasoning. Use for pathway analysis on a gene list, multi-source pathway concordance, and systems-level interpretation across databases.
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Low
Low-risk findings worth noting
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tessl review fix ./plugins/tooluniverse/skills/tooluniverse-systems-biology/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
In `python_implementation.py`, outsider-provided free text (e.g., `pathway_keyword`) is passed to multiple search tools (`kegg_search_pathway`, `WikiPathways_search`, `pc_search_pathways`, `biomodels_search`) whose returned fields (IDs/names/descriptions) are inserted into the generated report, creating an indirect prompt-injection exposure surface via tool-ingested content.
- Repository
- mims-harvard/ToolUniverse
- Commit
089eb8e
- Audited
- Security analysis
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