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tooluniverse-target-research

Comprehensive drug-target intelligence — tissue expression (GTEx, HPA), pathways, protein interactions (STRING), variant landscape (ClinVar, gnomAD), druggability (DGIdb, ChEMBL approved drugs). 9 parallel research paths with citations. Use for full target profile reports, target characterization for drug discovery, and 'tell me about target X' queries.

70

Quality

86%

Does it follow best practices?

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SecuritybySnyk

Low

Low-risk findings worth noting

The canonical home for this skill is tooluniverse-target-research in mims-harvard/ToolUniverse

SKILL.md
Quality
Evals
Security

Quality

Content

81%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-engineered orchestration skill body: precise tool inventory with corrected parameters, robust fallback chains, quantified evidence thresholds, and an explicitly checkpointed 9-path workflow. The main defects are some conceptual padding in the reasoning framework and — more materially — that all five referenced companion files referenced for implementation details and examples are missing from the bundle.

Suggestions

Include the five referenced companion files (IMPLEMENTATION.md, EVIDENCE_GRADING.md, REPORT_FORMAT.md, REFERENCE.md, EXAMPLES.md) in the bundle, or inline the minimum content needed to follow each PATH without them — currently every 'see [FILE].md' link is a dead end.

Tighten the 'Target Evaluation Reasoning Framework' section to the decision-relevant calibration facts (thresholds like OpenTargets > 0.7, pLI > 0.9, LOEUF < 0.35, Tclin/Tchem tiers) and cut generically inferable explanation, e.g., the tissue-specificity safety sentence.

Add one or two complete example tool invocations in the body (e.g., a resolved identifier set and a typical OpenTargets call) so the common happy path is executable without relying on the absent IMPLEMENTATION.md.

DimensionReasoningScore

Conciseness

The body is largely dense, high-value specifics — tool names, parameter corrections, fallback chains, data minimums, scoring thresholds — and delegates detail to reference files. The 'Target Evaluation Reasoning Framework' section contains some conceptual explanation Claude could largely derive (e.g., "a target expressed only in the disease-relevant tissue is far safer than one expressed ubiquitously"), which is more than purely lean but less than the noticeably padded score-3 pattern.

4 / 5

Actionability

Guidance is highly concrete and executable in intent: exact tool names, a verified parameter-correction table with a code snippet, explicit fallback chains (e.g., "ChEMBL_get_target_activities fails → GtoPdb_search_ligands → OpenTargets drugs"), and quantified minimums ("20 interactors OR documented explanation", "pLI > 0.9", "IC50 < 1μM"). It falls short of the score-5 anchor because the body itself contains only one code example and the worked call implementations are delegated to a file that is not present in the bundle.

4 / 5

Workflow Clarity

The multi-step process is explicitly sequenced with validation checkpoints: identifier resolution 'always first', Phase 0 'BEFORE calling ANY tool' parameter verification, PATH 0 run 'ALWAYS FIRST', a mandatory completeness audit 'REQUIRED before finalizing', report-first placeholders, and the rule 'NEVER silently skip failed tools. Always document failures and fallbacks.' This matches the score-5 anchor's clear sequence with explicit validation and error-recovery feedback loops (the retry/fallback section).

5 / 5

Progressive Disclosure

Structure is good: an overview body with one-level-deep, clearly signaled references both inline and in an end table (IMPLEMENTATION.md, EVIDENCE_GRADING.md, REPORT_FORMAT.md, REFERENCE.md, EXAMPLES.md). However, none of the five referenced files exist in the bundle (no references/, scripts/, or assets/ directories), so the navigation the body promises cannot actually be followed — a real organization gap that keeps this below the score-5 anchor's 'easy navigation'.

4 / 5

Total

17

/

20

Passed

Description

92%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong description: concrete, source-attributed capabilities, an explicit and naturally phrased 'Use for...' trigger clause, third-person voice, and a clearly delineated drug-target niche. The only weakness is that a few natural trigger phrasings users might actually say (target validation, druggability assessment as a question) are not covered.

DimensionReasoningScore

Specificity

The description enumerates multiple concrete capabilities with named data sources — "tissue expression (GTEx, HPA), pathways, protein interactions (STRING), variant landscape (ClinVar, gnomAD), druggability (DGIdb, ChEMBL approved drugs)" — comprehensive and specific rather than generic. It does not match the score-4 anchor's 'minor gaps in coverage' since the listed actions span the skill's full scope.

5 / 5

Completeness

It explicitly answers both questions: 'what' is the list of concrete intelligence-gathering capabilities across named databases, and 'when' is the explicit clause "Use for full target profile reports, target characterization for drug discovery, and 'tell me about target X' queries" with concrete trigger phrases. This matches the score-5 anchor exactly; it is above score 4 because the 'when' is specific and quoted, not merely present.

5 / 5

Trigger Term Quality

Natural trigger phrases are present — "full target profile reports", "target characterization for drug discovery", and the directly quotable user query "tell me about target X" — but common variants a user would say (e.g., "target validation", "what do we know about [target]", "is X druggable") are absent. Good coverage with a few natural terms missing matches the score-4 anchor rather than the comprehensive score-5 anchor.

4 / 5

Distinctiveness Conflict Risk

"Comprehensive drug-target intelligence" with named domain databases (GTEx, STRING, ClinVar, gnomAD, DGIdb, ChEMBL) carves out a clear niche with distinct triggers; minimal conflict risk with generic lookup or literature skills. Not score 4, since no plausible overlap with a closely related skill is identifiable from the description itself.

5 / 5

Total

19

/

20

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

relative_links

Relative link issues: 8 missing

Warning

Total

15

/

16

Passed

Repository
mims-harvard/ToolUniverse
Reviewed

Table of Contents

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