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finngen-phewas-skill

Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant

73

Quality

92%

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security
Low

W011: Third-party content exposure detected (indirect prompt injection risk).

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

The required workflow calls out to outsider-controlled web APIs (Ensembl in `scripts/variant_resolution.py` and FinnGen in `scripts/finngen_phewas.py`) and ingests their JSON responses into the script’s stdout, which is then surfaced back to the agent/LLM context as associations/regions/warnings.

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Repository

openai/plugins

Path

plugins/life-science-research/skills/finngen-phewas-skill/SKILL.md

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