ngs-bcl-to-fastq
Validate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.
69
83%
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Low
Low-risk findings worth noting
Low
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The required workflow ingests metadata by reading outsider-supplied files at runtime—specifically `RunInfo.xml` / `RunParameters.xml` and `SampleSheet.csv` from a user-provided (i.e., not operating-user-authored) sequencing run folder—into the agent context for validation/planning (e.g., sample sheet rows and instrument/read structure).
- Repository
- openai/plugins
- Commit
11c74d6
- Audited
- Security analysis
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