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ukb-topmed-phewas-skill

Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise UKB-TOPMed association results for one variant

80

Quality

100%

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SecuritybySnyk

Passed

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SKILL.md
Quality
Evals
Security

Quality

Content

100%Weight 40%Scale 1-3

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A compact, well-structured skill body for a single-task lookup: executable example, explicit I/O contract, clear single-action workflow, and appropriately scoped references. It matches the top anchor on all four content dimensions.

DimensionReasoningScore

Conciseness

The body is lean and assumes Claude's competence — it lists operating rules, I/O fields, and a single executable command without explaining what PheWAS or GRCh38 coordinates are, so every token earns its place.

3 / 3

Actionability

It provides a copy-paste-ready command (`echo '{...}' | python scripts/ukb_topmed_phewas.py`), concrete input field lists, and example JSON payloads, leaving no ambiguity about how to invoke the script.

3 / 3

Workflow Clarity

For this simple single-purpose lookup the sequence is unambiguous (resolve one input to GRCh38 → call with max_results=10 → increase only if truncated → return summary or raw path), and re-run/error handling is explicitly addressed.

3 / 3

Progressive Disclosure

At under 50 lines with no need for external references, the body is organized into clear sections and the References section correctly states no additional runtime references are needed; the referenced `scripts/ukb_topmed_phewas.py` is a real bundle file.

3 / 3

Total

12

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12

Passed

Description

100%Weight 40%Scale 1-3

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A tight, third-person description that covers concrete capabilities, natural domain trigger terms, an explicit use-when clause, and a clearly distinctive niche. It earns the top anchor on every dimension without padding.

DimensionReasoningScore

Specificity

The description names multiple concrete actions: 'Fetch compact UKB-TOPMed PheWAS summaries', 'accepting rsID, GRCh37, or GRCh38 input', and 'resolving to the required GRCh38 query', matching the top anchor that lists several specific actions.

3 / 3

Completeness

It states both what the skill does and an explicit 'Use when a user wants concise UKB-TOPMed association results for one variant' trigger, satisfying the what-and-when anchor at the top level.

3 / 3

Trigger Term Quality

It surfaces the natural terms a user of this niche would actually say — 'PheWAS', 'rsID', 'GRCh37', 'GRCh38', 'association results', 'variant' — giving good coverage rather than generic jargon.

3 / 3

Distinctiveness Conflict Risk

The niche (UKB-TOPMed PheWAS for single variants) is highly specific with distinct triggers, making conflict with other skills unlikely; it does not sit at score 2 because no overlap with sibling skills is apparent.

3 / 3

Total

12

/

12

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
openai/plugins
Reviewed

Table of Contents

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