building-genomics-pipelines
This skill should be used when the user asks to "build a genomics pipeline", "pick an nf-core pipeline", "which aligner/variant caller should I use", "analyze RNA-seq", "analyze single-cell RNA-seq", "annotate variants", "interpret variants with ACMG criteria", "detect CNVs", "call structural variants", or when choosing tools, file formats, and QC thresholds for NGS data. Provides opinionated tool defaults (aligners, variant callers, annotators), genomics file-format and reproducibility conventions, an nf-core pipeline selection table, and detailed references for RNA-seq (bulk and single-cell), variant annotation with clinical interpretation, and CNV/SV analysis. It does not teach Nextflow DSL2, Snakemake, or WDL authoring — for writing workflow code by hand, use those frameworks' own documentation.
81
94%
Does it follow best practices?
Impact
100%
1.07x1 of 3 eval scenarios. Add 2 more for a full score.
Low
Low-risk findings worth noting
W012: Unverifiable external dependency detected (runtime URL that controls agent).
What this means
The skill fetches instructions or code from an external URL at runtime, and the fetched content directly controls the agent’s prompts or executes code. This dynamic dependency allows the external source to modify the agent’s behavior without any changes to the skill itself.
Why it was flagged
The repository includes an installation command referencing an npm package `@provectusinc/awos-recruitment`, which is an arbitrary third-party registry location rather than an official publisher channel, qualifying as a weak/unknown operational dependency.
- Repository
provectus/awos-recruitment
- Revision
ce6a3ea
- Audited
- Security analysis
Is this your skill?
If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.