building-genomics-pipelines
This skill should be used when the user asks to "build a genomics pipeline", "call variants", "analyze RNA-seq", "run ChIP-seq analysis", "annotate variants", "QC sequencing data", "detect CNVs", or when writing any bioinformatics pipeline code involving NGS data. Provides expert guidance on pipeline frameworks (Nextflow, Snakemake, WDL), alignment, variant calling, and production-ready nf-core workflows.
68
82%
Does it follow best practices?
Impact
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No eval scenarios have been run
Advisory
Suggest reviewing before use
Security
1 medium severity finding. This skill can be installed but you should review these findings before use.
W012: Unverifiable external dependency detected (runtime URL that controls agent)
What this means
The skill fetches instructions or code from an external URL at runtime, and the fetched content directly controls the agent’s prompts or executes code. This dynamic dependency allows the external source to modify the agent’s behavior without any changes to the skill itself.
Why it was flagged
Potentially malicious external URL detected (high risk: 0.90). The skill includes an installation step that clones and runs code from https://github.com/Ensembl/ensembl-vep.git (git clone followed by perl INSTALL.pl), which fetches and executes remote code that the pipeline relies on for annotation, so this is a runtime external dependency.
- Repository
- provectus/awos-recruitment
- Commit
70de68f
- Audited
- Security analysis
Is this your skill?
If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.