building-genomics-pipelines
This skill should be used when the user asks to "build a genomics pipeline", "call variants", "analyze RNA-seq", "run ChIP-seq analysis", "annotate variants", "QC sequencing data", "detect CNVs", or when writing any bioinformatics pipeline code involving NGS data. Provides expert guidance on pipeline frameworks (Nextflow, Snakemake, WDL), alignment, variant calling, and production-ready nf-core workflows.
90
92%
Does it follow best practices?
Impact
78%
1.13xAverage score across 3 eval scenarios
Low
Low-risk findings worth noting
Low
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W012: Unverifiable external dependency detected (runtime URL that controls agent).
What this means
The skill fetches instructions or code from an external URL at runtime, and the fetched content directly controls the agent’s prompts or executes code. This dynamic dependency allows the external source to modify the agent’s behavior without any changes to the skill itself.
Why it was flagged
The skill includes an installation step that clones and runs code from https://github.com/Ensembl/ensembl-vep.git (git clone followed by perl INSTALL.pl), which fetches and executes remote code that the pipeline relies on for annotation, so this is a runtime external dependency.
- Repository
- provectus/awos-recruitment
- Commit
c97cd8e
- Audited
- Security analysis
Is this your skill?
If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.