biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
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Low
Low-risk findings worth noting
Fix and improve this skill with Tessl
tessl review fix ./backend/cli/skills/biology/biopython/SKILL.mdW011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The workflow accesses NCBI/PubMed via Bio.Entrez and runs remote BLAST searches which retrieve external records and sequences, representing low-risk dynamic data fetching.
- Repository
- synthetic-sciences/openscience
- Commit
4082a2e
- Audited
- Security analysis
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