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dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

64

Quality

77%

Does it follow best practices?

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SecuritybySnyk

Passed

No findings from the security scan

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tessl review fix ./backend/cli/skills/biology/dnanexus-integration/SKILL.md
SKILL.md
Quality
Evals
Security

Quality

Content

72%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured, actionable skill with executable code and clean one-level reference navigation. It is held back by section redundancy and a lack of explicit validation checkpoints in its batch and multi-step workflows.

Suggestions

De-duplicate the 'When to Use' list against the per-capability 'Common Use Cases' blocks to tighten token usage.

Add explicit validate/retry checkpoints to the batch and multi-step pipeline patterns (e.g., check job state, handle failures before proceeding) so workflow clarity can score higher.

Trim the generic 'Best Practices' list to DNAnexus-specific guidance that Claude would not already infer.

DimensionReasoningScore

Conciseness

Mostly efficient and avoids explaining concepts Claude already knows, but the 'When to Use' list overlaps the 'Core Capabilities' sections, each capability repeats a 'Common Use Cases' block, and the generic 10-item 'Best Practices' list adds padding that could be trimmed.

2 / 3

Actionability

Provides multiple complete, executable dxpy code examples (upload/run/download, search, app entry point, batch, multi-step pipeline, data organization) plus concrete install/login commands — copy-paste ready.

3 / 3

Workflow Clarity

A clear decision tree routes tasks and the pipeline example chains jobs, but batch/destructive operations lack explicit validation or failure-handling checkpoints, capping workflow clarity at 2 per the rubric's feedback-loop guideline.

2 / 3

Progressive Disclosure

The body is an overview that points to five real, one-level-deep reference files (verified in references/), each clearly signaled with a 'See references/X.md for:' list, enabling easy navigation.

3 / 3

Total

10

/

12

Passed

Description

82%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A specific, well-targeted description that names concrete capabilities and natural trigger terms for a clearly bounded genomics platform. Its main weakness is the absence of an explicit 'Use when' trigger clause, leaving the activation condition only implied.

Suggestions

Add an explicit 'Use when...' clause naming the situations that should activate this skill (e.g., 'Use when building or running DNAnexus apps/applets, managing genomics data, or scripting with dxpy').

Lead with the trigger condition so the 'when' is as prominent as the 'what'.

DimensionReasoningScore

Specificity

Lists multiple concrete actions — 'Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF' — rather than vague language.

3 / 3

Completeness

Clearly states what the skill does, but lacks an explicit 'Use when...' trigger; the closing 'for genomics pipeline development and execution' only implies when, capping completeness at 2 per the rubric guideline.

2 / 3

Trigger Term Quality

Covers natural domain terms a genomics user would say — 'DNAnexus', 'apps/applets', 'upload/download', 'dxpy', 'FASTQ/BAM/VCF', 'genomics pipeline' — with good variation.

3 / 3

Distinctiveness Conflict Risk

The DNAnexus cloud genomics niche is highly specific with distinct triggers, making conflict with other skills unlikely.

3 / 3

Total

11

/

12

Passed

Validation

87%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation14 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

frontmatter_unknown_keys

Unknown frontmatter key(s) found; consider removing or moving to metadata

Warning

Total

14

/

16

Passed

Repository
synthetic-sciences/openscience
Reviewed

Table of Contents

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