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ena-database

Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.

59

Quality

70%

Does it follow best practices?

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SecuritybySnyk

Low

Low-risk findings worth noting

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tessl review fix ./backend/cli/skills/databases/ena-database/SKILL.md
SKILL.md
Quality
Evals
Security

Low

Low-risk findings.

1 low severity finding. Worth noting, but not necessarily harmful.

Low

W011: Third-party content exposure detected (indirect prompt injection risk).

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

The workflow implied by SKILL.md uses ENA Browser/Portal/Taxonomy REST endpoints that return record metadata/text (XML/JSON/EMBL/FASTA) from the public ENA repository; those responses are outsider-authored free text that would be ingested into the agent’s runtime LLM context when the skill loads/parses them (e.g., response bodies like XML at `/browser/api/xml/{accession}` or EMBL at `/browser/api/text/{accession}`).

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Repository
synthetic-sciences/openscience
Audited
Security analysis
Snyk

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