geo-database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
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Low
Low-risk findings worth noting
Fix and improve this skill with Tessl
tessl review fix ./backend/cli/skills/databases/geo-database/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
This skill’s required runtime workflow fetches GEO records/series SOFT/MINiML text from NCBI (outsider-authored public web/FTP content) and parses it with libraries (e.g., GEOparse/Entrez) into readable prose/XML/format fields such as titles/summaries/characteristics that can be included in outputs passed into the agent’s LLM context.
- Repository
- synthetic-sciences/openscience
- Commit
52845c3
- Audited
- Security analysis
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