pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
64
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Low
Low-risk findings worth noting
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tessl review fix ./backend/cli/skills/databases/pubchem-database/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
PubChem “bioactivity_query.py” and “compound_search.py” ingest caller-supplied strings (e.g., target_name, identifier, smiles) directly into PubChem REST/PubChemPy API calls, so outsider-authored free text becomes runtime input to the skill’s requests.
- Repository
- synthetic-sciences/openscience
- Commit
52845c3
- Audited
- Security analysis
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