uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
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Low
Low-risk findings worth noting
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tessl review fix ./backend/cli/skills/databases/uniprot-database/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
This skill’s runtime workflow calls UniProt REST API endpoints (e.g., `stream_results` -> `/uniprotkb/stream` and `get_protein`/`search_proteins` -> other `/uniprotkb/...` endpoints), which returns outsider-authored free text (UniProt records/annotations) that is then yielded/printed and could be ingested into the agent/LLM context.
- Repository
- synthetic-sciences/openscience
- Commit
3a6c3a9
- Audited
- Security analysis
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