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pdb-database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

56

Quality

66%

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SecuritybySnyk

Low

Low-risk findings worth noting

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tessl review fix ./skills/bio/pdb-database/SKILL.md
SKILL.md
Quality
Evals
Security

Low

Low-risk findings.

1 low severity finding. Worth noting, but not necessarily harmful.

Low

W011: Third-party content exposure detected (indirect prompt injection risk).

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

The skill’s runtime workflow performs LLM-driven PDB text/search queries and data fetching (e.g., TextQuery and fetch/GraphQL) where the outsider-provided search text and GraphQL strings are sent to RCSB and results metadata may be ingested, so outsider-authored free text can influence what untrusted content the agent processes.

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Repository
wu-yc/LabClaw
Audited
Security analysis
Snyk

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