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tooluniverse-infectious-disease

Rapid pathogen characterization and drug repurposing analysis for infectious disease outbreaks. Identifies pathogen taxonomy, essential proteins, predicts structures, and screens existing drugs via docking. Use when facing novel pathogens, emerging infections, or needing rapid therapeutic options during outbreaks.

66

Quality

81%

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security

Quality

Content

62%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured, highly actionable outbreak-response workflow with strong validation scaffolding, but it is verbose (heavy illustrative output tables), its code relies on several undefined helper functions, and its only external reference points to a missing file.

Suggestions

Trim the fabricated example-output tables (docking scores, PMIDs, NCT IDs, citation counts) to compact format stubs; the report template already conveys the output shape, so the per-phase samples are redundant tokens.

Define or inline the undefined helper functions (classify_type, assess_druggability, parse_plddt, get_high_confidence, identify_binding_site, rank_targets, deduplicate) so the code blocks are fully copy-paste executable, or explicitly mark them as conceptual placeholders.

Create the referenced TOOLS_REFERENCE.md (or remove the broken link) and consider moving per-phase deep-dive content into one-level-deep reference files so SKILL.md reads as a lean overview.

DimensionReasoningScore

Conciseness

Domain content is mostly efficient, but the ~750-line body is padded with extensive fabricated example-output tables (docking scores 0.92, specific PMIDs/NCT IDs, citation counts '5,234') that largely duplicate the report template's format; not a score-1 because it does not lecture on basics Claude already knows, but not lean enough for 3.

2 / 3

Actionability

Provides concrete tool calls with specific parameters (e.g. tu.tools.NvidiaNIM_diffdock(protein=..., ligand=smiles, num_poses=5)) and a parameter-correction table, but the code is not fully copy-paste ready because it calls undefined helpers (classify_type, assess_druggability, parse_plddt, rank_targets, deduplicate), placing it at 2 rather than 3.

2 / 3

Workflow Clarity

Clear phased sequence (Phase 0-6) with explicit validation checkpoints (Phase 0 tool verification, pLDDT quality gates), a completeness checklist, and fallback chains as error-recovery feedback loops — matching the score-3 anchor rather than the checkpoint-missing anchor at 2.

3 / 3

Progressive Disclosure

Sections are organized, but the body is a monolithic 750-line wall with per-phase detail inline that could be split out, and the single one-level reference ([TOOLS_REFERENCE.md]) is well-signaled yet does not exist in any bundle directory — a broken reference — so it does not reach the well-split, easy-navigation bar of 3.

2 / 3

Total

9

/

12

Passed

Description

100%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, third-person description that concisely states concrete capabilities and provides an explicit 'Use when' trigger with natural outbreak-related terms. It is distinctive and unlikely to conflict with other skills.

DimensionReasoningScore

Specificity

Lists multiple specific concrete actions — 'Identifies pathogen taxonomy, essential proteins, predicts structures, and screens existing drugs via docking' — matching the score-3 anchor rather than the single/domain-only anchor at 2.

3 / 3

Completeness

Explicitly answers both what (the action list) and when ('Use when facing novel pathogens, emerging infections, or needing rapid therapeutic options during outbreaks'), satisfying the explicit-trigger bar of 3 rather than the implied-when bar of 2.

3 / 3

Trigger Term Quality

Covers natural terms users would say ('novel pathogens, emerging infections', 'drug repurposing', 'therapeutic options', 'outbreaks'); broader and more natural than the score-2 'Works with PDF files' style.

3 / 3

Distinctiveness Conflict Risk

A clear niche (infectious-disease outbreak drug repurposing via structure/docking) with distinct triggers unlikely to fire for unrelated skills; more specific than the score-2 'Works with document files' overlap case.

3 / 3

Total

12

/

12

Passed

Validation

87%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation14 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

skill_md_line_count

SKILL.md is long (750 lines); consider splitting into references/ and linking

Warning

relative_links

Relative link issues: 1 missing

Warning

Total

14

/

16

Passed

Repository
wu-yc/LabClaw
Reviewed

Table of Contents

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