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solublempnn

Inverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. 2022) — for sequences biased toward cytosolic expression and reduced aggregation. Reach for this skill when designs from vanilla ProteinMPNN are aggregating or going to inclusion bodies, when redesigning a membrane-adjacent fold for soluble expression, or when an E. coli expression screen is the next step.

78

Quality

100%

Does it follow best practices?

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security

Quality

Content

100%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A compact, well-structured skill body that gives an executable runnable example and focuses entirely on non-obvious gotchas and downstream validation rather than restating known concepts. It is appropriately self-contained for a single-task skill with no bundle files.

DimensionReasoningScore

Conciseness

The body is lean and assumes Claude's competence — it explains only non-obvious specifics (the load-bearing `cd`, the two-checkpoint limitation, the crystallisable-vs-soluble caveat) and never defines ProteinMPNN or inverse folding, matching the level-3 anchor where every token earns its place.

3 / 3

Actionability

Provides a complete, copy-paste-ready bash invocation with exact flags plus concrete follow-ups (the `--model_name` error, the LigandMPNN `--model_type soluble_mpnn` path, output at `out/seqs/<stem>.fa`), meeting the level-3 fully-executable anchor.

3 / 3

Workflow Clarity

The single running action is unambiguous with a called-out load-bearing step and explicit downstream validation ("check that the resulting designs still fold via boltz or esmfold2"), so under the simple-skill scoring note the clear sequence with a verification checkpoint scores 3.

3 / 3

Progressive Disclosure

No bundle files are present and the body is under 50 lines with well-organized section headers and only one-level-deep peer-skill pointers (proteinmpnn, ligandmpnn, boltz, esmfold2), satisfying the simple-skill exception where well-organized sections alone score 3.

3 / 3

Total

12

/

12

Passed

Description

100%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A tight, third-person description that states concrete capabilities and gives three explicit, natural-language use triggers, fully covering what and when without verbosity or over-claims. It is clearly distinct from the related proteinmpnn and ligandmpnn skills.

DimensionReasoningScore

Specificity

Names multiple concrete actions — "Inverse-fold a backbone with SolubleMPNN" for "sequences biased toward cytosolic expression and reduced aggregation" — matching the level-3 anchor listing specific concrete actions rather than the level-2 partial coverage.

3 / 3

Completeness

Explicitly answers both what (soluble-biased inverse folding) and when ("Reach for this skill when designs from vanilla ProteinMPNN are aggregating or going to inclusion bodies..."), satisfying the level-3 anchor with explicit triggers.

3 / 3

Trigger Term Quality

Includes natural terms a protein engineer would actually say — "aggregating," "inclusion bodies," "soluble expression," "E. coli expression screen" — giving good coverage rather than only some relevant keywords.

3 / 3

Distinctiveness Conflict Risk

Occupies a clear niche (soluble-biased inverse folding) with distinct triggers unlikely to fire for the wrong skill, distinguishing it from vanilla ProteinMPNN and LigandMPNN.

3 / 3

Total

12

/

12

Passed

Validation

81%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation13 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

metadata_field

'metadata' should map string keys to string values

Warning

frontmatter_unknown_keys

Unknown frontmatter key(s) found; consider removing or moving to metadata

Warning

Total

13

/

16

Passed

Repository
UnicomAI/wanwu
Reviewed

Table of Contents

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