my_claude_skills

thinking-deeply

Engages structured analysis to explore multiple perspectives and context dependencies before responding. Use when users ask confirmation-seeking questions, make leading statements, request binary choices, or when feeling inclined to quickly agree or disagree without thorough consideration.

busco-phylogeny

Generate phylogenies from genome assemblies using BUSCO/compleasm-based single-copy orthologs with scheduler-aware workflow generation

extract-from-pdfs

This skill should be used when extracting structured data from scientific PDFs for systematic reviews, meta-analyses, or database creation. Use when working with collections of research papers that need to be converted into analyzable datasets with validation metrics.