tooluniverse-protein-structure-retrieval
Protein structure retrieval from RCSB PDB, PDBe, and AlphaFold with disambiguation, quality assessment (resolution, R-factor, pLDDT), and metadata. Distinguishes high-quality experimental (X-ray under 2 Angstrom) vs predicted vs medium-quality structures. Use for fetching protein structures, structure-quality comparison, and selecting structures for drug design or modeling.
76
93%
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Low
Low-risk findings worth noting
Low
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The skill’s Phase 1/2 disambiguation and retrieval tools (e.g., PDBeSearch_search_structures, alphafold_get_prediction, RCSBData_get_entry, PDBeValidation_get_quality_scores, PDBe_KB_get_ligand_sites, pdbe_get_entry_summary/molecules) will ingest provider-sourced text/metadata derived from user-supplied protein name/IDs at runtime.
- Repository
- mims-harvard/ToolUniverse
- Commit
089eb8e
- Audited
- Security analysis
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