Content
85%Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.
The body is highly actionable with a well-sequenced, validated workflow and properly signaled one-level-deep references to real bundle scripts. Its main weakness is mild redundancy and inline restating of facts that dedicated lookup scripts already cover.
Suggestions
Collapse the top "TOP-OF-MIND RULE" block into a pointer to the FASTQ counter table below to remove the duplicated Trimmomatic explanation and save tokens.
Trim inline wobble rules and the peptide/foldamer helix section where the amino_acids.py / biology_facts.py scripts already provide authoritative lookup, replacing prose with a script invocation.
Move the dense Tool Parameter Quick Reference and Fallbacks tables into a bundled reference file referenced one level deep to keep SKILL.md a leaner overview.
| Dimension | Reasoning | Score |
|---|---|---|
Conciseness | Mostly efficient with concrete tool tables and recipes, but includes redundancy — the "TOP-OF-MIND RULE" restates the Trimmomatic counting logic detailed later, and wobble rules and peptide/foldamer content are spelled out inline despite lookup scripts existing. It could be tightened without losing clarity. | 2 / 3 |
Actionability | Tools are documented with required params, return-shape examples, executable recipes (e.g. the mRNA recipe and ortholog recipe), and real runnable scripts with exact invocation commands — fully copy-paste ready. | 3 / 3 |
Workflow Clarity | A clear phased pipeline (Phases 1–6), RULE ZERO checkpoint for pre-computed results, per-phase gotchas, and an explicit counter-selection table for the risky Trimmomatic counting step provide clear sequencing with validation/feedback guidance. | 3 / 3 |
Progressive Disclosure | The body is an overview pointing to four real bundle scripts (sequence_tools.py, amino_acids.py, biology_facts.py, translate_dna.py) via clearly signaled one-level-deep path references, with detail appropriately deferred to those files. | 3 / 3 |
Total | 11 / 12 Passed |