tooluniverse-sequence-analysis
Biological sequence analysis — gene/protein sequence retrieval (NCBI, Ensembl, UniProt), nucleotide/protein search, ortholog discovery, and FASTQ QC + alignment workflows (Trimmomatic, BWA, samtools, coverage depth). Use for sequence retrieval, sequence comparison, FASTQ QC analysis, and read alignment pre-processing.
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Low-risk findings worth noting
Fix and improve this skill with Tessl
tessl review fix ./plugin/skills/tooluniverse-sequence-analysis/SKILL.mdW011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The required workflow fetches and parses protein sequence FASTA files from the UniProt REST API (`https://rest.uniprot.org/uniprotkb/{accession}.fasta`), which involves fetching external web content.
- Repository
- mims-harvard/ToolUniverse
- Commit
164aaf1
- Audited
- Security analysis
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