plugins

Run or plan ChIP-seq, CUT&RUN, or CUT&Tag QC, control handling, spike-in, peak calling, broad-vs-narrow target selection, replicate, bigWig, and differential binding workflows.

Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.

Run or plan bulk RNA-seq differential-expression analysis from count matrices with replicate, design formula, contrast, batch, normalization, QC plot, and result-table checks.

Run or plan bulk RNA-seq FASTQ-to-count processing with sample-sheet, strandedness, genome annotation, alignment or pseudoalignment, MultiQC, and count-matrix QC checks.

Validate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.

Run or plan ATAC-seq QC, alignment, TSS enrichment, fragment-size, blacklist, peak-calling, consensus peak, and differential accessibility workflows.

Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.

Kick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.

Guide for using Netlify Image CDN for image optimization and transformation. Use when serving optimized images, creating responsive image markup, setting up user-uploaded image pipelines, or configuring image transformations. Covers the /.netlify/images endpoint, query parameters, remote image allowlisting, clean URL rewrites, and composing uploads with Functions + Blobs.

Use when the task involves authentication, user signups, logins, password recovery, OAuth providers, role-based access control, or protecting routes and functions. Always use `@netlify/identity`. Never use `netlify-identity-widget` or `gotrue-js` — they are deprecated.

Guide for writing Netlify serverless functions. Use when creating API endpoints, background processing, scheduled tasks, or any server-side logic using Netlify Functions. Covers modern syntax (default export + Config), TypeScript, path routing, background functions, scheduled functions, streaming, and method routing.

Guide for deploying web frameworks on Netlify. Use when setting up a framework project (Vite/React, Astro, TanStack Start, Next.js, Nuxt, SvelteKit, Remix) for Netlify deployment, configuring adapters or plugins, or troubleshooting framework-specific Netlify integration. Covers what Netlify needs from each framework and how adapters handle server-side rendering.

Guide for using Netlify Forms for HTML form handling. Use when adding contact forms, feedback forms, file upload forms, or any form that should be collected by Netlify. Covers the data-netlify attribute, spam filtering, AJAX submissions, file uploads, notifications, and the submissions API.

Guide for writing Netlify Edge Functions. Use when building middleware, geolocation-based logic, request/response manipulation, authentication checks, A/B testing, or any low-latency edge compute. Covers Deno runtime, context.next() middleware pattern, geolocation, and when to choose edge vs serverless.

Deploy projects to Netlify with the Netlify CLI. Use when the user wants to link a repo, validate deploy settings, run a deploy, or choose between preview and production flows.

Reference for netlify.toml configuration. Use when configuring build settings, redirects, rewrites, headers, deploy contexts, environment variables, or any site-level configuration. Covers the complete netlify.toml syntax including redirects with splats/conditions, headers, deploy contexts, functions config, and edge functions config.

Guide for using the Netlify CLI and deploying sites. Use when installing the CLI, linking sites, deploying (Git-based or manual), managing environment variables, or running local development. Covers netlify dev, netlify deploy, Git vs non-Git workflows, and environment variable management.

Guide for controlling caching on Netlify's CDN. Use when configuring cache headers, setting up stale-while-revalidate, implementing on-demand cache purge, or understanding Netlify's CDN caching behavior. Covers Cache-Control, Netlify-CDN-Cache-Control, cache tags, durable cache, and framework-specific caching patterns.

Guide for using Netlify Blobs object storage. Use when storing files, images, documents, or simple key-value data without a full database. Covers getStore(), CRUD operations, metadata, listing, deploy-scoped vs site-scoped stores, and local development.

Guide for using Netlify AI Gateway to access AI models. Use when adding AI capabilities or selecting/changing AI models. Must be read before choosing a model. Covers supported providers (OpenAI, Anthropic, Google), SDK setup, environment variables, and the list of available models.

Guides and best practices for working with Neon Serverless Postgres. Covers getting started, local development with Neon, choosing a connection method, Neon features, authentication (@neondatabase/auth), PostgREST-style data API (@neondatabase/neon-js), Neon CLI, and Neon's Platform API/SDKs. Use for any Neon-related questions.

Diagnose and fix excessive Postgres egress (network data transfer) in a codebase. Use when a user mentions high database bills, unexpected data transfer costs, network transfer charges, egress spikes, "why is my Neon bill so high", "database costs jumped", SELECT * optimization, query overfetching, reduce Neon costs, optimize database usage, or wants to reduce data sent from their database to their application. Also use when reviewing query patterns for cost efficiency, even if the user doesn't explicitly mention egress or data transfer.

Use when summarizing a fund or ETF with Morningstar ratings, returns, risk, holdings, fees, and caveats.

Use when screening funds or ETFs by Morningstar category, ratings, fees, assets, returns, or risk.

Use when comparing 2 to 4 funds or ETFs with Morningstar ratings, returns, risk, and holdings data.