plugins

Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.

Route single-cell or single-nucleus RNA-seq FASTQs to public count-generation workflows and defer post-count matrix QC, annotation, clustering, and UMAP analysis to the embedded scrna-seq-qc skill.

Kick off public shotgun metagenomics QC, host-depletion, taxonomic profiling, and functional profiling workflows using nf-core/taxprofiler, Kraken2, Bracken, MetaPhlAn, and HUMAnN.

Choose and apply automatic layout strategies for node-link diagrams and connected-node visuals. Use when the user asks how to auto-arrange nodes, reduce line crossings, route edges, avoid overlaps, stabilize layout, or choose graph-layout algorithms for network diagrams, dependency graphs, database schema diagrams, ERDs, state machines, decision trees, flow diagrams, box-and-line editors, or other line-connected nodes.

Capture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.

Prepare meeting materials with Notion context and supplemental research; use when gathering context, drafting agendas/pre-reads, and tailoring materials to attendees.

Research across Notion and synthesize into structured documentation; use when gathering info from multiple Notion sources to produce briefs, comparisons, or reports with citations.

Turn Notion specs into implementation plans, tasks, and progress tracking; use when implementing PRDs/feature specs and creating Notion plans + tasks from them.

Vercel Observability expert guidance — Drains (logs, traces, speed insights, web analytics), Web Analytics, Speed Insights, runtime logs, custom events, OpenTelemetry integration, and monitoring dashboards. Use when instrumenting, debugging, or optimizing application performance and user experience on Vercel.

Coordinate the end-to-end CAD/source-asset to SimReady workflow. Use for broad requests such as CAD to SimReady, source asset to simulation-ready USD, or prop packaging that require conversion, material/physics assignment, SimReady conformance, validation, and optional package creation; deploy or verify Content Agents services first when property assignment is enabled; route single-stage work through nested references.

Use as the top-level router for Omniverse Realtime Viewer USD app requests and focused viewer reference documents.

Top-level workflow skill for USD performance diagnosis and optimization. Use for slow loading, high memory, low FPS, or 'optimize my scene' requests; delegates auth/runtime setup to Phase 0 owners.

Guide Codex through instrumenting or extending repositories with OpenAI Ads Measurement Pixel and optional Conversions API (CAPI). Use when adding Ads conversion tracking, browser pixel events, server-side conversion events, event_id deduplication, CAPI secret placeholders, incremental conversion coverage, or validating Ads conversion setup. Applies to local repositories and PR review contexts; prioritize safe, reviewable diffs and never place API keys or secrets in source code or client bundles.

Use when an OpenAI API request fails and Codex needs to classify the likely cause, explain the next step, and route to the right follow-up. Covers common runtime failures such as blocked outbound network access, invalid credentials, exhausted API quota or credits, rate limits, and model, project, or organization access issues; delegate key provisioning to openai-platform-api-key and current documentation lookups to openai-docs.

Use when Codex is asked to build, run, test, debug, or configure an OpenAI-backed or provider-unspecified AI app, UI, script, CLI, generator, or tool, especially requests phrased only as "using AI" or generators driven by forms/user input; also use for OPENAI_API_KEY or sk-proj setup. Treat this as the credential gate: inspect safely, ask reuse-vs-new before API work, and never expose plaintext.

Submit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices. Use when a user wants concise Open Targets summaries or per-datasource evidence context

Prepare macOS packaging and notarization workflows. Use when archiving apps, validating bundles, or explaining distribution-only failures.

Stripe payments integration guidance — native Vercel Marketplace setup, checkout sessions, webhook handling, subscription billing, and the Stripe SDK. Use when implementing payments, subscriptions, or processing transactions.

Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search. Use when a user wants concise PharmGKB summaries

Implement 2D browser games with Phaser. Use when the user wants a Phaser, TypeScript, and Vite stack for scenes, gameplay systems, cameras, sprite animation, and DOM-overlay HUD patterns.